uzh logo trep-db vers. 17 Aug 2016

TREP, the TRansposable Elements Platform

TEs by Classes

TREP implements the TE classification system proposed by Wicker et al., 2007. The naming convention proposes that superfamily names are written in italic and at least the first letter is capitalized.

Click on the "Code" link for background information on individual TE superfamilies.

Hover over "DNA" and "protein" links (e.g. 'total_TREP', 'nrTREP' or 'PTREP') for information about number of TEs in database and click the corresponding links for download of TE sequences in FASTA format.



CodeClassOrderSuperfamilyDNADNAprotein
RLG Retrotransposon   LTR  Gypsy  total TREP948 elements nrTREP 315 elementsPTREP 113 elements
RLC Retrotransposon   LTR  Copia  total TREP642 elements nrTREP 308 elementsPTREP 148 elements
RLB Retrotransposon   LTR  Bel-Pao  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RLR Retrotransposon   LTR  Retrovirus  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RLE Retrotransposon   LTR  ERV  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RLX Retrotransposon   LTR  unknown  total TREP141 elements nrTREP 89 elementsPTREP 0 elements
RYD Retrotransposon   LTR  DIRs  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RYN Retrotransposon   LTR  Ngaro  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RYV Retrotransposon   LTR  Viper  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RPP Retrotransposon   LTR  Penelope  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RIR Retrotransposon   non-LTR (SINE)  R2  total TREP1 elements nrTREP 1 elementsPTREP 5 elements
RIT Retrotransposon   non-LTR (SINE)  RTE  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RIL Retrotransposon   non-LTR (SINE)  L1  total TREP8 elements nrTREP 8 elementsPTREP 20 elements
RIJ Retrotransposon   non-LTR (SINE)  Jokey  total TREP68 elements nrTREP 14 elementsPTREP 5 elements
RII Retrotransposon   non-LTR (SINE)  I  total TREP213 elements nrTREP 49 elementsPTREP 16 elements
RIX Retrotransposon   non-LTR (SINE)  unknown  total TREP116 elements nrTREP 83 elementsPTREP 141 elements
RST Retrotransposon   non-LTR (SINE)  tRNA  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RSL Retrotransposon   non-LTR (SINE)  7SL  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RSS Retrotransposon   non-LTR (SINE)  5S  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
RSX Retrotransposon   non-LTR (SINE)  unknown  total TREP43 elements nrTREP 33 elementsPTREP 0 elements
RXX Retrotransposon   unknown  unknown  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
DTT DNA-transposon   TIR  Mariner  total TREP639 elements nrTREP 177 elementsPTREP 13 elements
DTA DNA-transposon   TIR  hAT  total TREP34 elements nrTREP 32 elementsPTREP 3 elements
DTM DNA-transposon   TIR  Mutator  total TREP243 elements nrTREP 192 elementsPTREP 19 elements
DTE DNA-transposon   TIR  Merlin  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
DTR DNA-transposon   TIR  Transib  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
DTP DNA-transposon   TIR  P  total TREP7 elements nrTREP 1 elementsPTREP 0 elements
DTB DNA-transposon   TIR  PiggyBac  total TREP3 elements nrTREP 3 elementsPTREP 0 elements
DTH DNA-transposon   TIR  Harbinger  total TREP208 elements nrTREP 156 elementsPTREP 64 elements
DTC DNA-transposon   TIR  CACTA  total TREP360 elements nrTREP 170 elementsPTREP 99 elements
DTX DNA-transposon   TIR  unknown  total TREP66 elements nrTREP 43 elementsPTREP 24 elements
DYC DNA-transposon   TIR  Crypton  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
DHH DNA-transposon   Helitron  Helitron  total TREP120 elements nrTREP 45 elementsPTREP 88 elements
DMM DNA-transposon   Maverik  Maverik  total TREP0 elements nrTREP 0 elementsPTREP 0 elements
DXX DNA-transposon   unknown  unknown  total TREP10 elements nrTREP 8 elementsPTREP 2 elements
XXX unknown   unknown  unknown  total TREP234 elements nrTREP 82 elementsPTREP 7 elements