uzh logo trep-db vers. 20 Aug 2019

TREP, the TRansposable Elements Platform

PTREP contains sequences from the following genera and species


Click on hyperlinks to download individual subsets for genus or species (in FASTA format).


GenusSpeciesTotal elementsTaxo1Taxo2
Alexandriumtamaresea2AlveolatesAlveolata
Perkinsusmarinus8AlveolatesAlveolata
Entamoebahistolytica1AmoebozoansArchamoebae
Dictyosteliumpurpureum15AmoebozoansMycetozoa
Caenorhabditiselegans8ANIMALIAInvertebrata
Drosophilamelanogaster12ANIMALIAInvertebrata
Homosapiens5ANIMALIAVertebrata
Corynebacteriumglutamicum1BACTERIA
Mesorhizobiumloti1BACTERIA
Burkholderiacrenata1BACTERIANULL
Burkholderiaumbellata2BACTERIANULL
Escherichiacoli5BACTERIANULL
Sphingobiummichaelis13BACTERIANULL
Shigellaflexneri1BACTERIAProteobacteria
Guillardiatheta14ChromalveolatesCryptophyta
Emilianiahuxlei23ChromalveolatesHaptophyceae
Blumeriagraminis_hordei15FUNGILeotiomycetes
Blumeriagraminis_tritici164FUNGILeotiomycetes
Aspergillusoryzae1FUNGINULL
Saccharomycescerevisiae13FUNGINULL
Magnaporthegrisea3FUNGISordariomycetes
Trypanosomabrucei1JEHEuglenozoans
Negleriagruberi15JEHHeteroloboseans
Unknownunknown7NULLNULL
Monosigabrevicollis3OpisthokontaChoanoflagellida
Physcomitrellapatens1PLANTAEBryophyta
Arabidopsisthaliana8PLANTAEDicotyledons
Betavulgaris2PLANTAEDicotyledons
Brassicanapus2PLANTAEDicotyledons
Lotusjaponicus2PLANTAEDicotyledons
Medicagotruncatula2PLANTAEDicotyledons
Nicotianatabacum3PLANTAEDicotyledons
Solanumtuberosum2PLANTAEDicotyledons
Tarenayahassleriana4PLANTAEDicotyledons
Theobromacacao2PLANTAEDicotyledons
Brachypodiumdistachyon98PLANTAEMonocotyledons
Hordeumvulgare96PLANTAEMonocotyledons
Oryzaglaberrima3PLANTAEMonocotyledons
Oryzasativa62PLANTAEMonocotyledons
Secalecereale5PLANTAEMonocotyledons
Sorghumbicolor6PLANTAEMonocotyledons
Triticumaestivum39PLANTAEMonocotyledons
Triticumdurum7PLANTAEMonocotyledons
Triticummonococcum36PLANTAEMonocotyledons
Triticumunknown38PLANTAEMonocotyledons
Triticumurartu1PLANTAEMonocotyledons
Zeamays19PLANTAEMonocotyledons
Giardialamblia8PODDiplomonads
Trichomonasvaginalis1PODParabasalids
Rhizariaunknown6RhizariaAmoeboids
Phytophthorainfestans13StramenopilesOomycetes